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Does updating to a new version of Vanilla overwrite the custom.css file?

edited January 2011 in Vanilla 2.0 - 2.8
I did some customizing of the colors in the custom.css file in the Embedded Theme.

I'd also like to tweak the registerapproval.php file and the termsofservice.php file.

Am I right in assuming that all of those files will be overwritten every time I update to a new version?
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