[Solved] Upgrade to 2.1.8b2 Overwrite files

Tim, you said....
If you can, instead of simply copying the new files over the old files, delete your original files first (everything except conf/, cache/, uploads/, custom themes/and custom plugins/ and *then* copy the news files. This will ensure that any files we've removed from Vanilla in the updated version will not stick around in your installation.
Does this mean I should NOT overwrite the above directories?
If you can, instead of simply copying the new files over the old files, delete your original files first (everything except conf/, cache/, uploads/, custom themes/and custom plugins/ and *then* copy the news files. This will ensure that any files we've removed from Vanilla in the updated version will not stick around in your installation.
Does this mean I should NOT overwrite the above directories?
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